| Rhodobacteraceae | |
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Scientific classification  | |
| Domain: | Bacteria |
| Phylum: | Pseudomonadota |
| Class: | Alphaproteobacteria |
| Order: | Rhodobacterales |
| Family: | Rhodobacteraceae Garrity et al. 2006 |
| Genera | |
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See text | |
| Synonyms | |
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The Rhodobacteraceae are a family of Pseudomonadota in the order Rhodobacterales within the alpha subgroup.[1] Like all Pseudomonadota, they are gram-negative. It contains chemoorganotrophs and photoheterotrophs bacteria. Many occur in aquatic habitats.
Genera
Accepted genera
The following genera have been effectively and validly published:[2][3]
- Acidimangrovimonas Ren et al. 2019
- Actibacterium Lucena et al. 2012
- Aestuariibius Park et al. 2018
- Aestuariicoccus Feng et al. 2018
- Aestuariihabitans Yoon et al. 2014
- Aestuariivita Park et al. 2014
- Aestuarium Yu et al. 2019
- Agaricicola Chu et al. 2010
- Albibacillus Hördt et al. 2020
- Albidovulum Albuquerque et al. 2003
- Albimonas Lim et al. 2008
- Albirhodobacter Nupur et al. 2015
- Aliiroseovarius Park et al. 2015
- Aliishimia Kim et al. 2019
- Alkalilacustris Zhang et al. 2019
- Allgaiera Hördt et al. 2020
- Allosediminivita Hördt et al. 2020
- Amaricoccus Maszenan et al. 1997
- Amylibacter Teramoto and Nishijima 2014
- Antarcticimicrobium Zhang et al. 2020
- Antarctobacter Labrenz et al. 1998
- Aquicoccus Feng et al. 2018
- Aquimixticola Park et al. 2015
- Arenibacillus Kim et al. 2019
- Arenibacterium Baek et al. 2020
- Ascidiaceihabitans Kim et al. 2014
- Boseongicola Park et al. 2014
- Brevirhabdus Wu et al. 2015
- Carideicomes Wang et al. 2020
- Celeribacter Ivanova et al. 2010
- Cereibacter Suresh et al. 2015
- Chachezhania Yuan et al. 2020
- Citreimonas Choi and Cho 2006
- Cognatishimia Wirth and Whitman 2018
- Cognatiyoonia Wirth and Whitman 2018
- Cribrihabitans Chen et al. 2014
- Cypionkella Hördt et al. 2020
- Defluviimonas Foesel et al. 2013
- Dinoroseobacter Biebl et al. 2005
- Donghicola Yoon et al. 2007
- Epibacterium Penesyan et al. 2013
- Falsirhodobacter Subhash et al. 2013
- Fertoeibacter Szuroczki et al. 2021
- Flavimaricola Wirth and Whitman 2018
- Fluviibacterium Sun et al. 2020
- Frigidibacter Li and Zhou 2015
- Gemmobacter Rothe et al. 1988
- Haematobacter Helsel et al. 2007
- Hahyoungchilella Kim and Lee 2020
- Halocynthiibacter Kim et al. 2014
- Halodurantibacterium Lv et al. 2015
- Halovulum Sun et al. 2015
- Hasllibacter Kim et al. 2012
- Histidinibacterium Wang et al. 2019
- Hwanghaeicola Kim et al. 2010
- Jannaschia Wagner-Döbler et al. 2003
- Jhaorihella Rekha et al. 2011
- Kandeliimicrobium Wang et al. 2018
- Kangsaoukella Lee et al. 2020
- Lacimonas Zhong et al. 2015
- Leisingera Schaefer et al. 2002
- Lentibacter Li et al. 2012
- Limibaculum Shin et al. 2017
- Limimaricola Wirth and Whitman 2018
- Litoreibacter Romanenko et al. 2011
- Litorisediminicola Yoon et al. 2013
- Litorisediminivivens Park et al. 2016
- Litorivita Hetharua et al. 2018
- Loktanella Van Trappen et al. 2004
- Lutimaribacter Yoon et al. 2009
- Maliponia Jung et al. 2016
- Mameliella Zheng et al. 2010
- Mangrovicoccus Yu et al. 2018
- Maribius Choi et al. 2007
- Marimonas Thongphrom et al. 2017
- Marinibacterium Li et al. 2015
- Marinovum Martens et al. 2006
- Maritimibacter Lee et al. 2007
- Marivita Hwang et al. 2009
- Marivivens Park et al. 2016
- Meinhardsimonia Hördt et al. 2020
- Meridianimarinicoccus Ren et al. 2019
- Methylarcula Doronina et al. 2000
- Monaibacterium Chernikova et al. 2017
- Neptunicoccus Zhang et al. 2018
- Nereida Pujalte et al. 2005
- Nioella Rajasabapathy et al. 2015
- Oceanibium Chang et al. 2019
- Oceanicella Albuquerque et al. 2012
- Oceanicola Cho and Giovannoni 2004
- Oceaniglobus Li et al. 2017
- Octadecabacter Gosink et al. 1998
- Pacificibacter Romanenko et al. 2011
- Pacificitalea Hördt et al. 2020
- Paenimaribius Park et al. 2019
- Paenirhodobacter Wang et al. 2014
- Palleronia Martínez-Checa et al. 2005
- Paracoccus Davis 1969 (Approved Lists 1980)
- Paradonghicola Lee et al. 2019
- Paraphaeobacter Cai et al. 2017
- Pararhodobacter Foesel et al. 2013
- Parasedimentitalea Ding et al. 2020
- Paroceanicella corrig. Liu et al. 2020
- Pelagicola Kim et al. 2008
- Pelagimonas Hahnke et al. 2013
- Pelagivirga Ji et al. 2018
- Pelagovum Ren et al. 2020
- Phaeobacter Martens et al. 2006
- Phycocomes Zhu et al. 2019
- Planktomarina Giebel et al. 2013
- Planktotalea Hahnke et al. 2012
- Pontibaca Kim et al. 2010
- Ponticoccus Hwang and Cho 2008
- Pontivivens Park et al. 2015
- Poseidonocella Romanenko et al. 2012
- Primorskyibacter Romanenko et al. 2011
- Profundibacter Le Moine Bauer et al. 2019
- Profundibacterium Lai et al. 2013
- Pseudaestuariivita Wirth and Whitman 2018
- Pseudodonghicola Hameed et al. 2014
- Pseudogemmobacter Suman et al. 2019
- Pseudohalocynthiibacter Won et al. 2015
- Pseudomaribius Park et al. 2018
- Pseudooceanicola Lai et al. 2015
- Pseudooctadecabacter Billerbeck et al. 2015
- Pseudophaeobacter Breider et al. 2014
- Pseudoprimorskyibacter Hördt et al. 2020
- Pseudopuniceibacterium Zhang et al. 2019
- Pseudorhodobacter Uchino et al. 2003
- Pseudoroseicyclus Park et al. 2016
- Pseudoruegeria Yoon et al. 2007
- Pseudoseohaeicola Park et al. 2015
- Pseudothioclava Kim and Lee 2020
- Psychromarinibacter Qiao et al. 2017
- Pukyongiella Kim et al. 2020
- Puniceibacterium Liu et al. 2014
- Qingshengfaniella Wang et al. 2021
- Rhodobaca Milford et al. 2001
- Rhodobacter Imhoff et al. 1984
- Rhodobaculum Bryantseva et al. 2015
- Rhodophyticola Jung et al. 2019
- Rhodosalinus Guo et al. 2017
- Rhodovulum Hiraishi and Ueda 1994
- Roseibaca Labrenz et al. 2009
- Roseibacterium Suzuki et al. 2006
- Roseicitreum Yu et al. 2011
- Roseicyclus Rathgeber et al. 2005
- Roseinatronobacter Sorokin et al. 2000
- Roseisalinus Labrenz et al. 2005
- Roseivivax Suzuki et al. 1999
- Roseobacter Shiba 1991
- Roseovarius Labrenz et al. 1999
- Rubellimicrobium Denner et al. 2006
- Rubribacterium Boldareva et al. 2010
- Rubricella Yang et al. 2017
- Rubrimonas Suzuki et al. 1999
- Ruegeria Uchino et al. 1999
- Sagittula Gonzalez et al. 1997
- Salinihabitans Yoon et al. 2009
- Salinovum Qu et al. 2017
- Salipiger Martínez-Cánovas et al. 2004
- Sedimentitalea Breider et al. 2014
- Sediminimonas Wang et al. 2009
- Seohaeicola Yoon et al. 2009
- Shimia Choi and Cho 2006
- Silicimonas Crenn et al. 2016
- Sinirhodobacter corrig. Yang et al. 2018
- Solirhodobacter Chu et al. 2020
- Sulfitobacter Sorokin 1996
- Tabrizicola Tarhriz et al. 2014
- Tateyamaria Kurahashi and Yokota 2008
- Thalassobius Arahal et al. 2005
- Thalassococcus Lee et al. 2007
- Thioclava Sorokin et al. 2005
- Tranquillimonas Harwati et al. 2008
- Tritonibacter Klotz et al. 2018
- Tropicibacter Harwati et al. 2009
- Tropicimonas Harwati et al. 2009
- Vannielia Hördt et al. 2020
- Wenxinia Ying et al. 2007
- Xinfangfangia Hu et al. 2018
- Yoonia Wirth and Whitman 2018
- Youngimonas Hameed et al. 2014
Provisional Genera
The following genera have been published, but not validated according to the Bacteriological Code:[3]
- "Aliisedimentitalea" Kim et al. 2015
- "Alterinioella" Kong et al. 2021
- "Falsigemmobacter" Li et al. 2020
- "Jindonia" Park et al. 2017
- "Ketogulonicigenium" corrig. Urbance et al. 2001
- "Nitropelagi" Jeong and Lee 2016
- "Oceaniovalibus" Liu et al. 2012
- "Oceanomicrobium" Dai et al. 2021
- "Piezobacter" Takai et al. 2009
- "Pikeienuella" Park et al. 2021
- "Plastorhodobacter" Xie et al. 2015
- "Polymorphum" Cai et al. 2011
- "Pseudopontivivens" Park et al. 2018
- "Roseibacula" Nuyanzina-Boldareva and Gorlenko 2014
- "Zongyanglinia" Xu et al. 2021
Candidatus Genera
The following candidatus genera have been published:[3]
- "Candidatus Halichondriibacter" corrig. Knobloch et al. 2019
- "Candidatus Kopriimonas" Quinn et al. 2012
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature[3] and the phylogeny is based on whole-genome sequences.[4][lower-alpha 1]
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See also
Notes
- ↑ Acidimangrovimonas, Aestuariibius, Aestuariicoccus, Aestuariihabitans, Aestuarium, Agaricicola, Albirhodobacter, Aliishimia, Alkalilacustris, Allgaiera, Amaricoccus, Antarcticimicrobium, Aquicoccus, Arenibacillus, Arenibacterium, Carideicomes, Chachezhania, Falsirhodobacter, Fertoeibacter, Fluviibacterium, Hahyoungchilella, Halodurantibacterium, Halovulum, Histidinibacterium, Kangsaoukella, Lacimonas, Limibaculum, Litorisediminicola, Litorisediminivivens, Litorivita, Marimonas, Meridianimarinicoccus, Methylarcula, Nioella, Oceanibium, Paenimaribius, Paradonghicola, Paraphaeobacter, Parasedimentitalea, Paroceanicella, Pelagivirga, Pelagovum, Phycocomes, Profundibacter, Profundibacterium, Pseudogemmobacter, Pseudohalocynthiibacter, Pseudomaribius, Pseudopuniceibacterium, Pseudoseohaeicola, Pseudothioclava, Psychromarinibacter, Pukyongiella, Qingshengfaniella, Rhodobaculum, Rhodophyticola, Roseibaca, Roseibacterium, Roseicyclus, Rubribacterium, Rubricella, Salinovum, Seohaeicola, Sinirhodobacter, Solirhodobacter, Tateyamaria, Xinfangfangia, and Youngimonas are not included in this phylogenetic tree.
References
- ↑ See the NCBI webpage on Rhodobacteraceae. Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information. Retrieved 2007-03-19.
- ↑ Parker, Charles Thomas; Wigley, Sarah; Garrity, George M (1 January 2003). Parker, Charles Thomas; Garrity, George M (eds.). "Taxonomic Abstract for the families". The NamesforLife Abstracts. doi:10.1601/tx.1037.
- 1 2 3 4 Euzéby JP, Parte AC. "Rhodobacteraceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 2, 2021.
- ↑ Hördt A, López MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, et al. (2020). "Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria". Frontiers in Microbiology. 11: 468. doi:10.3389/fmicb.2020.00468. PMC 7179689. PMID 32373076.
Further reading
- Garrity GM, Holt JG (2001). "Taxonomic Outline of the Archaea and Bacteria". In DR Boone, RW Castenholz (eds.). Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria (2nd ed.). New York: Springer Verlag. pp. 155–166. ISBN 978-0-387-98771-2.
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