Structures and names of common heterocyclic compounds

Pyridine, a heterocyclic compound

A heterocyclic compound or ring structure is a cyclic compound that has atoms of at least two different elements as members of its ring(s).^[1] Heterocyclic organic chemistry is the branch of organic chemistry dealing with the synthesis, properties, and applications of organic heterocycles.^[2]

Examples of heterocyclic compounds include all of the nucleic acids, the majority of drugs, most biomass (cellulose and related materials), and many natural and synthetic dyes. More than half of known compounds are heterocycles.^[3] 59% of US FDA-approved drugs contain nitrogen heterocycles.^[4]

Classification

The study of organic heterocyclic chemistry focuses especially on organic unsaturated derivatives, and the preponderance of work and applications involves unstrained organic 5- and 6-membered rings. Included are pyridine, thiophene, pyrrole, and furan. Another large class of organic heterocycles refers to those fused to benzene rings. For example, the fused benzene derivatives of pyridine, thiophene, pyrrole, and furan are quinoline, benzothiophene, indole, and benzofuran, respectively. The fusion of two benzene rings gives rise to a third large family of organic compounds. Analogs of the previously mentioned heterocycles for this third family of compounds are acridine, dibenzothiophene, carbazole, and dibenzofuran, respectively.

Heterocyclic organic compounds can be usefully classified based on their electronic structure. The saturated organic heterocycles behave like the acyclic derivatives. Thus, piperidine and tetrahydrofuran are conventional amines and ethers, with modified steric profiles. Therefore, the study of organic heterocyclic chemistry focuses on organic unsaturated rings.

Notes on lists

• "Heteroatoms" are atoms in the ring other than carbon atoms.
• Some of the names refer to classes of compounds rather than individual compounds.
• Also no attempt is made to list isomers.

3-membered rings

Although subject to ring strain, 3-membered heterocyclic rings are well characterized.^[6]

4-membered rings

5-membered rings

6-membered rings

7-membered rings

In a 7-membered ring, the heteroatom must be able to provide an empty π-orbital (e.g. boron) for "normal" aromatic stabilization to be available; otherwise, homoaromaticity may be possible. Compounds with one heteroatom include:

Those with two heteroatoms include:

8-membered rings

Borazocine is an eight-membered ring with four nitrogen heteroatoms and four boron heteroatoms.

9-membered rings

Images of rings with one heteroatom

Names in italics are retained by IUPAC and they do not follow the Hantzsch-Widman nomenclature

	Saturated			Unsaturated
Heteroatom	Nitrogen	Oxygen	Sulfur	Nitrogen	Oxygen	Sulfur
3-atom ring	Aziridine	Oxirane	Thiirane	Azirine	Oxirene	Thiirene
4-atom ring	Azetidine	Oxetane	Thietane	Azete	Oxete	Thiete
5-atom ring	Pyrrolidine	Oxolane	Thiolane	Pyrrole	Furan	Thiophene
6-atom ring	Piperidine	Oxane	Thiane	Pyridine	Pyran	Thiopyran
7-atom ring	Azepane	Oxepane	Thiepane	Azepine	Oxepine	Thiepine
8-atom ring	Azocane	Oxocane	Thiocane	Azocine	Oxocine	Thiocine
9-atom ring	Azonane	Oxonane	Thionane	Azonine	Oxonine	Thionine

Fused/condensed rings

Heterocyclic rings systems that are formally derived by fusion with other rings, either carbocyclic or heterocyclic, have a variety of common and systematic names. For example, with the benzo-fused unsaturated nitrogen heterocycles, pyrrole provides indole or isoindole depending on the orientation. The pyridine analog is quinoline or isoquinoline. For azepine, benzazepine is the preferred name. Likewise, the compounds with two benzene rings fused to the central heterocycle are carbazole, acridine, and dibenzoazepine. Thienothiophene are the fusion of two thiophene rings. Phosphaphenalenes are a tricyclic phosphorus-containing heterocyclic system derived from the carbocycle phenalene.

History of heterocyclic chemistry

The history of heterocyclic chemistry began in the 1800s, in step with the development of organic chemistry. Some noteworthy developments:^[10]

• 1818: Brugnatelli makes alloxan from uric acid
• 1832: Dobereiner produces furfural (a furan) by treating starch with sulfuric acid
• 1834: Runge obtains pyrrole ("fiery oil") by dry distillation of bones
• 1906: Friedlander synthesizes indigo dye, allowing synthetic chemistry to displace a large agricultural industry
• 1936: Treibs isolates chlorophyll derivatives from crude oil, explaining the biological origin of petroleum.
• 1951: Chargaff's rules are described, highlighting the role of heterocyclic compounds (purines and pyrimidines) in the genetic code.

Uses

Heterocyclic compounds are pervasive in many areas of life sciences and technology.^[2] Many drugs are heterocyclic compounds.^[11]

References

External links

Wikimedia Commons has media related to heterocyclic compounds.

Wikiquote has quotations related to Heterocyclic compound.

• Hantzsch-Widman nomenclature, IUPAC
• Heterocyclic amines in cooked meat, US CDC
• List of known and probable carcinogens, American Cancer Society
• List of known carcinogens by the State of California, Proposition 65 (more comprehensive)