MMP16

MMP16
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	1RM8
Identifiers
Aliases	MMP16, C8orf57, MMP-X2, MT-MMP2, MT-MMP3, MT3-MMP, matrix metallopeptidase 16
External IDs	OMIM: 602262 MGI: 1276107 HomoloGene: 55939 GeneCards: MMP16
Gene location (Human)
Chr.	Chromosome 8 (human)
End	88,328,025 bp
Gene location (Mouse)
Chr.	Chromosome 4 (mouse)
End	18,119,145 bp
RNA expression pattern
	Top expressed in
	endothelial cell; ; tibia; ; Brodmann area 23; ; postcentral gyrus; ; middle temporal gyrus; ; entorhinal cortex; ; superior frontal gyrus; ; stromal cell of endometrium; ; cerebellar vermis; ; ganglionic eminence;
	Top expressed in
	calvaria; ; rib; ; body of femur; ; belly cord; ; pineal gland; ; nucleus accumbens; ; ventromedial nucleus; ; globus pallidus; ; fossa; ; dermis;
	More reference expression data
	; ; ; ;
	More reference expression data
Gene ontology
Molecular function	metal ion binding; peptidase activity; enzyme activator activity; hydrolase activity; metallopeptidase activity; metalloendopeptidase activity; zinc ion binding; metalloaminopeptidase activity;
Cellular component	integral component of membrane; membrane; extracellular matrix; plasma membrane; extracellular region; cell surface; Golgi lumen; integral component of plasma membrane; extracellular space;
Biological process	ossification; extracellular matrix disassembly; endochondral ossification; craniofacial suture morphogenesis; chondrocyte proliferation; collagen catabolic process; embryonic cranial skeleton morphogenesis; bone development; positive regulation of catalytic activity; proteolysis; protein processing; protein metabolic process; skeletal system development; extracellular matrix organization;
	Sources:Amigo / QuickGO
Orthologs
	4325
	17389
	ENSG00000156103
	ENSMUSG00000028226
	P51512
	Q9WTR0
	NM_005941; NM_022564; NM_032297
	NM_019724; NM_001379518; NM_001379519
	NP_005932
	NP_062698; NP_001366447; NP_001366448
	Wikidata
View/Edit Human	View/Edit Mouse

Matrix metalloproteinase-16 is an enzyme that in humans is encoded by the MMP16 gene.^[5]^[6]

Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease processes, such as arthritis and metastasis. Most MMP's are secreted as inactive proproteins which are activated when cleaved by extracellular proteinases. This gene produces at least two transcripts, one which encodes a membrane-bound form and another a soluble form of the protein. Both forms of the protein activate MMP2 by cleavage. This gene was once referred to as MT-MMP2, but was renamed as MT-MMP3 or MMP16.^[6]

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000156103 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000028226 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ Takino T, Sato H, Shinagawa A, Seiki M (Nov 1995). "Identification of the second membrane-type matrix metalloproteinase (MT-MMP-2) gene from a human placenta cDNA library. MT-MMPs form a unique membrane-type subclass in the MMP family". J Biol Chem. 270 (39): 23013–20. doi:10.1074/jbc.270.39.23013. PMID 7559440.
1 2 "Entrez Gene: MMP16 matrix metallopeptidase 16 (membrane-inserted)".

Nagase H, Woessner JF (1999). "Matrix metalloproteinases". J. Biol. Chem. 274 (31): 21491–4. doi:10.1074/jbc.274.31.21491. PMID 10419448.
Andersson B, Wentland MA, Ricafrente JY (1996). "A "double adaptor" method for improved shotgun library construction". Anal. Biochem. 236 (1): 107–13. doi:10.1006/abio.1996.0138. PMID 8619474.
Mattei MG, Roeckel N, Olsen BR, Apte SS (1997). "Genes of the membrane-type matrix metalloproteinase (MT-MMP) gene family, MMP14, MMP15, and MMP16, localize to human chromosomes 14, 16, and 8, respectively". Genomics. 40 (1): 168–9. doi:10.1006/geno.1996.4559. PMID 9070935.
Shofuda K, Yasumitsu H, Nishihashi A (1997). "Expression of three membrane-type matrix metalloproteinases (MT-MMPs) in rat vascular smooth muscle cells and characterization of MT3-MMPs with and without transmembrane domain". J. Biol. Chem. 272 (15): 9749–54. doi:10.1074/jbc.272.15.9749. PMID 9092507.
Yu W, Andersson B, Worley KC (1997). "Large-Scale Concatenation cDNA Sequencing". Genome Res. 7 (4): 353–8. doi:10.1101/gr.7.4.353. PMC 139146. PMID 9110174.
Sato H, Tanaka M, Takino T (1997). "Assignment of the human genes for membrane-type-1, -2, and -3 matrix metalloproteinases (MMP14, MMP15, and MMP16) to 14q12.2, 16q12.2-q21, and 8q21, respectively, by in situ hybridization". Genomics. 39 (3): 412–3. doi:10.1006/geno.1996.4496. PMID 9119382.
Matsumoto S, Katoh M, Saito S (1998). "Identification of soluble type of membrane-type matrix metalloproteinase-3 formed by alternatively spliced mRNA". Biochim. Biophys. Acta. 1354 (2): 159–70. doi:10.1016/s0167-4781(97)00120-6. PMID 9396633.
Terp GE, Christensen IT, Jørgensen FS (2000). "Structural differences of matrix metalloproteinases. Homology modeling and energy minimization of enzyme-substrate complexes". J. Biomol. Struct. Dyn. 17 (6): 933–46. doi:10.1080/07391102.2000.10506582. PMID 10949161. S2CID 1270176.
Iida J, Pei D, Kang T (2001). "Melanoma chondroitin sulfate proteoglycan regulates matrix metalloproteinase-dependent human melanoma invasion into type I collagen". J. Biol. Chem. 276 (22): 18786–94. doi:10.1074/jbc.M010053200. PMID 11278606.
Strausberg RL, Feingold EA, Grouse LH (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Jung M, Römer A, Keyszer G (2003). "mRNA expression of the five membrane-type matrix metalloproteinases MT1-MT5 in human prostatic cell lines and their down-regulation in human malignant prostatic tissue". Prostate. 55 (2): 89–98. doi:10.1002/pros.10194. PMID 12661033. S2CID 21596144.
Takino T, Koshikawa N, Miyamori H (2003). "Cleavage of metastasis suppressor gene product KiSS-1 protein/metastin by matrix metalloproteinases". Oncogene. 22 (30): 4617–26. doi:10.1038/sj.onc.1206542. hdl:2297/2668. PMID 12879005. S2CID 10007952.
Rozanov DV, Hahn-Dantona E, Strickland DK, Strongin AY (2004). "The low density lipoprotein receptor-related protein LRP is regulated by membrane type-1 matrix metalloproteinase (MT1-MMP) proteolysis in malignant cells". J. Biol. Chem. 279 (6): 4260–8. doi:10.1074/jbc.M311569200. PMID 14645246.
Lang R, Braun M, Sounni NE (2004). "Crystal structure of the catalytic domain of MMP-16/MT3-MMP: characterization of MT-MMP specific features" (PDF). J. Mol. Biol. 336 (1): 213–25. doi:10.1016/j.jmb.2003.12.022. PMID 14741217.
Shofuda T, Shofuda K, Ferri N (2004). "Cleavage of focal adhesion kinase in vascular smooth muscle cells overexpressing membrane-type matrix metalloproteinases" (PDF). Arterioscler. Thromb. Vasc. Biol. 24 (5): 839–44. doi:10.1161/01.ATV.0000126680.78500.4c. PMID 15044209. S2CID 22959266.
Wang SC, Lien HC, Xia W (2004). "Binding at and transactivation of the COX-2 promoter by nuclear tyrosine kinase receptor ErbB-2". Cancer Cell. 6 (3): 251–61. doi:10.1016/j.ccr.2004.07.012. PMID 15380516.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
Kimura K, Wakamatsu A, Suzuki Y (2006). "Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC 1356129. PMID 16344560.

External links

The MEROPS online database for peptidases and their inhibitors: M10.016
Overview of all the structural information available in the PDB for UniProt: P51512 (Matrix metalloproteinase-16) at the PDBe-KB.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000156103 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000028226 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid7559440-5] Takino T, Sato H, Shinagawa A, Seiki M (Nov 1995). "Identification of the second membrane-type matrix metalloproteinase (MT-MMP-2) gene from a human placenta cDNA library. MT-MMPs form a unique membrane-type subclass in the MMP family". J Biol Chem. 270 (39): 23013–20. doi:10.1074/jbc.270.39.23013. PMID 7559440.

[entrez-6] 1 2 "Entrez Gene: MMP16 matrix metallopeptidase 16 (membrane-inserted)".

[1]

[2]

[3]

[4]

[5]

[6]

Proteases: metalloendopeptidases (EC 3.4.24)
ADAM proteins	Alpha secretases ADAM9 ADAM10 ADAM17 ADAM19 ADAM2 ADAM7 ADAM8 ADAM11 ADAM12 ADAM15 ADAM18 ADAM22 ADAM23 ADAM28 ADAM33 ADAMTS1 ADAMTS2 ADAMTS3 ADAMTS4 ADAMTS5 ADAMTS8 ADAMTS9 ADAMTS10 ADAMTS12 ADAMTS13
Matrix metalloproteinases	Collagenases MMP1 MMP8 Gelatinases MMP2 MMP9 MMP3 MMP7 MMP10 MMP11 MMP12 MMP13 MMP14 MMP15 MMP16 MMP17 MMP19 MMP20 MMP21 MMP23A MMP23B MMP24 MMP25 MMP26 MMP27 MMP28
Other	Neprilysin Procollagen peptidase Thermolysin Pregnancy-associated plasma protein A Bone morphogenetic protein 1 Lysostaphin Insulin-degrading enzyme ZMPSTE24

Enzymes
Activity	Active site Binding site Catalytic triad Oxyanion hole Enzyme promiscuity Diffusion-limited enzyme Cofactor Enzyme catalysis
Regulation	Allosteric regulation Cooperativity Enzyme inhibitor Enzyme activator
Classification	EC number Enzyme superfamily Enzyme family List of enzymes
Kinetics	Enzyme kinetics Eadie–Hofstee diagram Hanes–Woolf plot Lineweaver–Burk plot Michaelis–Menten kinetics
Types	EC1 Oxidoreductases (list) EC2 Transferases (list) EC3 Hydrolases (list) EC4 Lyases (list) EC5 Isomerases (list) EC6 Ligases (list) EC7 Translocases (list)

References

Further reading

External links